In order for me to make my commands file look like yours, I to tab twice, otherwise it will look how I previously posted. This is what I have now and it is still not working. This is the same error I am encountering...
ERROR - line 3 of 'commands' is not recognized
commands-file
#
shortsleep
10usecs sleep 1000000usecs
50usecs exit
#
longsleep
10usecs sleep 5000000usecs
50usecs exit
#
cal
80usecs write terminal 2000B
90usecs exit
#
copyfile
200usecs read hd 48000B
300usecs write hd 48000B
600usecs read hd 21000B
700usecs write hd 21000B
1000usecs exit
#
shell
100usecs write terminal 10B
120usecs read terminal 4B
220usecs spawn cal
230usecs wait
1000usecs exit
#
sysconfig-file
# devicename readspeed writespeed
#
device usb3.1 640000000Bps 640000000Bps
device terminal 10Bps 3000000Bps
device hd 160000000Bps 80000000Bps
device ssd 480000000Bps 420000000Bps
#
timequantum 100usec